Intelligent Molecular Design & System Lab

We develop cutting-edge deep learning frameworks and multiscale simulations to accelerate structure-based drug design and structural biology.

AI/ML
Deep Learning
MD
Molecular Dynamics
PDB
Protein Structure

Research Highlights

Pioneering next-generation therapeutics through AI and molecular systems

AI-Driven Drug Design

Developing generative AI models to explore vast chemical spaces and optimize molecular entities with high binding affinity and ADMET profiles.

Deep Learning Drug Discovery

Molecular Dynamics

Simulating complex biomolecular systems to understand protein-ligand interactions at the atomic level using multiscale approaches.

MD Simulation Computational Biology

Biomarker Discovery

Elucidating functional mechanisms of critical biomarkers, with a strong focus on the cardiac Troponin complex and cardiomyopathies.

Biomarkers Structural Biology

About Us

Learn about our research philosophy and the people behind our work

Lab Philosophy

At IMDS Lab, we believe in the power of computational approaches to unravel the complexities of biological systems. Our mission is to bridge the gap between theoretical knowledge and practical applications in drug discovery and structural biology.

2020
Founded
15+
Members
50+
Publications

Principal Investigator

Dr. Kim Jongho

Associate Professor

Dr. Kim is an expert in computational biology and AI-driven drug discovery with over 15 years of experience in the field.

Research Areas

Our research bridges the gap between state-of-the-art computational algorithms and complex biological systems.

Generative AI for de novo Protein & Drug Design

We build diffusion models and GNNs to design novel therapeutic proteins and small molecules, ensuring high binding affinity and synthesizability.

Deep Learning Drug Discovery Generative AI

Multiscale Molecular Dynamics Simulation

By combining coarse-grained and all-atom MD simulations, we investigate large-scale conformational changes in biological macromolecules over microsecond timescales.

Computational Biology MD Simulation

Structural Bioinformatics: The Troponin Complex

Applying structure prediction and dynamics analysis to uncover the mechanistic role of Troponin mutations in cardiomyopathies, paving the way for precision medicine.

Biomarkers Structural Biology

Publications

Recent research publications from our lab

Deep learning approaches for protein structure prediction and drug discovery

Kim, J., Lee, S., Park, H.

Nature Computational Science 2024
DOI

Multiscale molecular dynamics simulations reveal troponin complex dynamics in cardiomyopathies

Park, S., Kim, H., Lee, J.

Structure 2023
DOI

Generative adversarial networks for novel drug candidate generation

Lee, M., Choi, Y., Kim, D.

Journal of Chemical Information and Modeling 2023
DOI

Lab Members

Meet our talented team of researchers and students

Dr. Kim Jongho

Principal Investigator

Ph.D. in Bioinformatics

jkim@yonsei.ac.kr

Dr. Sarah Lee

Postdoctoral Researcher

Ph.D. in Computational Biology

slee@yonsei.ac.kr

Park Minjun

Ph.D. Candidate

M.S. in Biotechnology

mpark@yonsei.ac.kr

News & Updates

Latest news and achievements from our lab

Award March 15, 2024

IMDS Lab receives prestigious research grant

Our lab has been awarded a major research grant for AI-driven drug discovery projects.

Publication February 28, 2024

New publication in Nature Computational Science

Our latest research on deep learning for protein structure prediction has been published.

Conference January 20, 2024

IMDS Lab presents at international conference

Team members presented our latest findings at the International Conference on Computational Biology.

Join Our Team

We're always looking for talented researchers and students to join our lab

Graduate Students

Join our Ph.D. or M.S. programs in Biotechnology and work on cutting-edge research projects.

  • • Strong background in biology or computer science
  • • Interest in computational biology
  • • Programming skills preferred

Postdocs

We welcome postdoctoral researchers with expertise in computational biology, machine learning, or related fields.

  • • Ph.D. in relevant field
  • • Strong publication record
  • • Collaborative spirit

Collaborations

We are open to collaborations with industry partners and academic institutions for joint research projects.

  • • Industry partnerships
  • • Academic collaborations
  • • Joint grant applications

Contact Us

Get in touch with us for collaborations, inquiries, or just to say hello

Get in Touch

Address

Yonsei University, Future Campus
Department of Biotechnology

Phone

+82-2-2123-1234